Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015923882.1_cds_XP_016472356.1_64599
CDS Infomation

[gene=LOC107794389] [db_xref=GeneID:107794389] [protein=linoleate 9S-lipoxygenase 5, chloroplastic-like] [protein_id=XP_016472356.1] [location=join(4053..4157,4244..4478,4573..4902,4989..5074,7134..7223,7394..7692,7770..8033,8598..9366)] [gbkey=CDS]
Sequence

ATGTCTCTCCAAGTTACATTCAGACAGATGGTTCATTTTGAATGCAAATCTTGGATTTAT
CCCAATCATTTAACTCAAAAAGCAAGGATTTTTTTCTCAAACACTTGTTATCTTCCAAGC
CAAACACCAAATAGTCTGCTGCAACTAAGGAAACAAGAACTTGATACCTTGAGAGGAGAT
GGAACTCCAGGGAGAACTAGAGAATGGCATCGGGTTTATGACTACGATTTCTATAATGAT
CTCGGTGATCCTCAGCGAGGGGAAAGGCCAGTTTTAGGAGGTTCAGTTTCTTATCCGTAT
CCAAGGAGAGGAAAAACTGGTGAACCACATATTCATTCAGAAAATGAGAAGGGGATGTTC
AAGATAGACAATTGTATCCCTCCAGATGAAAGATTTAGCCCCGAGAAGCTATCAGAGTTT
GCGAAGAAAGTTATCCAGGCCACCTTGCACTATGTCGTTTCTCAGGGGGAATCAGTGTTA
AGAGAAGAAACCAACCAATTCAAGTCATTCAATGAGATCAAAGAGCTATTTTCGGGAAAG
AAAAACCAAGTGGTGCAAGAATGGATGATAAGGAAACTGGAAACTCATCTAGCAAAAGAG
ATTTTCAAGGAGACTGAACGTGGAATCAAAGATTACACAGCGAAGTTTCCAATGCCTCAG
TTATTTGCAGGGAACGAACTTGCATGGAAGGATGATAAGGAGTTTGGACGCCAAATGCTT
GCAGGAATTAATGCAACTCTAATTCAGTGTTTGCAGGCTTTTCCACCAAGAAGCAAGAAT
GGAATATGGAGTTCAATAAGAAGATCGCACATAGAACATAACCTTGATGGGCTCACTCTT
CAAGAGGCAATGAACCAATGGAGGATTTTCATCTTGGACCACCATGACTACCTCATGCCA
TTTTTGGGACAAATAAACAAAAATGGTGTATGTGCATATGCATCCAGAACTCTGCTATTC
TTAAAGGACGATGCCACGCTAAAGCCACTGGCAATAGAACTAAGTTTACCAGGGCTTTCA
CCTGGCACTGAGATCCACAGGGTATTTCGTCCAGGGACCAATGGATCAGAGGCAGCCTTA
TGGCAGCTTGCTAAAGTTCATGTGGCAGTAAACGACTCTGGTTATCATCAGCTAATCAGC
CATTGGCTAAAAACTCATGCAGTTGTAGAGCCATTCATTATTGCCACCAGAAGGCAGTTG
AGTGTTATGCACCCGATTCACCGGTTATTGGATCCTCATTTCAAGGACACTATGCATACT
AATGCATTGGCTCGGATTACGGTCTTAAAAGCTGGAGGAATCTTCGAGAAGACCCTTTAT
TCTGGAGAAGCATCTATGGAGCTATCTTCTTCACTCTATAAGGAATGGAGATTTGATGAA
CAAAGCCTCCCTGGTGATTTGGTGAAAAGAGGTTTGGCTTTCCAGAACTCAGAATGCCTG
GCTGGCATTCAGCTTCTCTTTGAAGATTATCCATATGGTGCAGATGGACTAGAAATTTGG
GTAGCAACCAAGAGATGGGTAACAGACTTTTGTCGATATTTCTACAAGGATGATAATTCC
CTGAGATCTGACCATGAGATCCAAGAATGGTGGTCAGAGATAAGGAAAATTGGTCATGGA
GACAAGTGTAACGAAACATGGTGGAGCTCAATGACTACCGTCTCTGACCTAGTAGAGGCT
CTCACAACCCTTATATGGATTTCCTCATGTCTTCATGCTTCAGTTAACTTTGGACAATAT
GAATATGCGGGTCATCCACTAAATCGCCCAACCAAATGTCGGAATTTCATCGCGATGGAA
GGGACAAGAGAGTATGCAGAGTTTCTCCATGACCCAGACAAGTTCTTTCTCAAAATGTTA
CCCAACAGGTCTGAGATTACCCTATATTTGGCGTTATTAGAGATACTGTCAGCGCATACA
TCTGATGAAGTATACTTGGGTCAACGACAATCTCCAAACTGGATAGATGACGTATGGGTA
AAGCAAAGGTTTGAGCAATTTGCCGAGGAACTTAACGAAGTGCATAAAAGGATAGTGGAG
AGAAATGCAGATTCCAAACTTAAGAACAGACGGGGGCCGTCCACTATCCCGTACAAGCTT
CTGGACCCTACAGTCTCCAATATTAAATCAGGTCAGGGTATCACAGCAATAGGGATACCT
AATAGCATATCCATGTAA

Peptide Sequence

PEP ID

XP_016472356.1
PEP Infomation

PREDICTED: linoleate 9S-lipoxygenase 5, chloroplastic-like [Nicotiana tabacum]
Sequence

MSLQVTFRQMVHFECKSWIYPNHLTQKARIFFSNTCYLPSQTPNSLLQLRKQELDTLRGD
GTPGRTREWHRVYDYDFYNDLGDPQRGERPVLGGSVSYPYPRRGKTGEPHIHSENEKGMF
KIDNCIPPDERFSPEKLSEFAKKVIQATLHYVVSQGESVLREETNQFKSFNEIKELFSGK
KNQVVQEWMIRKLETHLAKEIFKETERGIKDYTAKFPMPQLFAGNELAWKDDKEFGRQML
AGINATLIQCLQAFPPRSKNGIWSSIRRSHIEHNLDGLTLQEAMNQWRIFILDHHDYLMP
FLGQINKNGVCAYASRTLLFLKDDATLKPLAIELSLPGLSPGTEIHRVFRPGTNGSEAAL
WQLAKVHVAVNDSGYHQLISHWLKTHAVVEPFIIATRRQLSVMHPIHRLLDPHFKDTMHT
NALARITVLKAGGIFEKTLYSGEASMELSSSLYKEWRFDEQSLPGDLVKRGLAFQNSECL
AGIQLLFEDYPYGADGLEIWVATKRWVTDFCRYFYKDDNSLRSDHEIQEWWSEIRKIGHG
DKCNETWWSSMTTVSDLVEALTTLIWISSCLHASVNFGQYEYAGHPLNRPTKCRNFIAME
GTREYAEFLHDPDKFFLKMLPNRSEITLYLALLEILSAHTSDEVYLGQRQSPNWIDDVWV
KQRFEQFAEELNEVHKRIVERNADSKLKNRRGPSTIPYKLLDPTVSNIKSGQGITAIGIP
NSISM

Transcript Sequence

Gene sequence data has not been registered.